Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Cotton_A_20737

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3354
ACGTcount: A:0.30, C:0.19, G:0.26, T:0.26


Found at i:1774 original size:12 final size:12

Alignment explanation


    Indices: 1757--1782  Score: 52
    Period size: 12  Copynumber: 2.2  Consensus size: 12

       1747 GCTTCGGTGG

                        
       1757 AGAAAAAGAAGA
          1 AGAAAAAGAAGA

                        
       1769 AGAAAAAGAAGA
          1 AGAAAAAGAAGA

              
       1781 AG
          1 AG

       1783 GAGACTGGTT


Statistics
Matches: 14,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  12   14  1.00

ACGTcount: A:0.73, C:0.00, G:0.27, T:0.00


Consensus pattern (12 bp):   
AGAAAAAGAAGA
Done.