Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Cotton_A_02566

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 536

Length: 894
ACGTcount: A:0.31, C:0.21, G:0.21, T:0.26


Found at i:729 original size:15 final size:15

Alignment explanation


    Indices: 709--738  Score: 60
    Period size: 15  Copynumber: 2.0  Consensus size: 15

        699 CCCCACTACA

                           
        709 AACAACAACAATATC
          1 AACAACAACAATATC

                           
        724 AACAACAACAATATC
          1 AACAACAACAATATC

        739 GTAGATTGCA


Statistics
Matches: 15,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  15   15  1.00

ACGTcount: A:0.60, C:0.27, G:0.00, T:0.13


Consensus pattern (15 bp):   
AACAACAACAATATC
Done.