Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Cotton_A_20858

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2541
ACGTcount: A:0.32, C:0.21, G:0.22, T:0.25


Found at i:1608 original size:12 final size:12

Alignment explanation


    Indices: 1591--1615  Score: 50
    Period size: 12  Copynumber: 2.1  Consensus size: 12

       1581 TGATGCAGTA

                        
       1591 GACGAAGATGAT
          1 GACGAAGATGAT

                        
       1603 GACGAAGATGAT
          1 GACGAAGATGAT

             
       1615 G
          1 G

       1616 GTGAACAAGA


Statistics
Matches: 13,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  12   13  1.00

ACGTcount: A:0.40, C:0.08, G:0.36, T:0.16


Consensus pattern (12 bp):   
GACGAAGATGAT
Done.