Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Cotton_A_09150

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1742
ACGTcount: A:0.26, C:0.21, G:0.22, T:0.32


Found at i:1699 original size:21 final size:21

Alignment explanation


    Indices: 1673--1715  Score: 77
    Period size: 21  Copynumber: 2.0  Consensus size: 21

       1663 CCATGGATGT

                                 
       1673 TAATGAAGTTCCAAACCCATC
          1 TAATGAAGTTCCAAACCCATC

                      *          
       1694 TAATGAAGTTGCAAACCCATC
          1 TAATGAAGTTCCAAACCCATC

             
       1715 T
          1 T

       1716 CTCCAATTAA


Statistics
Matches: 21,  Mismatches: 1, Indels: 0
        0.95            0.05        0.00

Matches are distributed among these distances:
  21   21  1.00

ACGTcount: A:0.37, C:0.26, G:0.12, T:0.26


Consensus pattern (21 bp):   
TAATGAAGTTCCAAACCCATC
Done.