Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Cotton_A_32309

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 316

Length: 528
ACGTcount: A:0.30, C:0.20, G:0.24, T:0.26


Found at i:33 original size:21 final size:21

Alignment explanation


    Indices: 7--49  Score: 77
    Period size: 21  Copynumber: 2.0  Consensus size: 21

          1 ATGGGT

                                 
          7 CCAACTAATCCAGGTGATATG
          1 CCAACTAATCCAGGTGATATG

                       *         
         28 CCAACTAATCCTGGTGATATG
          1 CCAACTAATCCAGGTGATATG

             
         49 C
          1 C

         50 TTTCTTCACC


Statistics
Matches: 21,  Mismatches: 1, Indels: 0
        0.95            0.05        0.00

Matches are distributed among these distances:
  21   21  1.00

ACGTcount: A:0.30, C:0.26, G:0.19, T:0.26


Consensus pattern (21 bp):   
CCAACTAATCCAGGTGATATG
Done.