Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Cotton_A_23293

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1926
ACGTcount: A:0.32, C:0.17, G:0.25, T:0.26


Found at i:375 original size:3 final size:3

Alignment explanation


    Indices: 367--402  Score: 65
    Period size: 3  Copynumber: 12.3  Consensus size: 3

        357 TCCTCTTCGT

                                                             
        367 GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA G-A GAA G
          1 GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA G

        403 GAAAGTAGGA


Statistics
Matches: 32,  Mismatches: 0, Indels: 2
        0.94            0.00        0.06

Matches are distributed among these distances:
   2    2  0.06
   3   30  0.94

ACGTcount: A:0.64, C:0.00, G:0.36, T:0.00


Consensus pattern (3 bp):   
GAA

Done.