Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Cotton_A_14999

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 760

Length: 1268
ACGTcount: A:0.30, C:0.19, G:0.28, T:0.23


Found at i:127 original size:21 final size:21

Alignment explanation


    Indices: 88--127  Score: 53
    Period size: 21  Copynumber: 1.9  Consensus size: 21

         78 GGTCGACGAA

                 *        *      
         88 AACGACGACGTCCTTAACGTT
          1 AACGAAGACGTCCTGAACGTT

                       *       
        109 AACGAAGACGTTCTGAACG
          1 AACGAAGACGTCCTGAACG

        128 ATGAAGACGA


Statistics
Matches: 16,  Mismatches: 3, Indels: 0
        0.84            0.16        0.00

Matches are distributed among these distances:
  21   16  1.00

ACGTcount: A:0.33, C:0.25, G:0.23, T:0.20


Consensus pattern (21 bp):   
AACGAAGACGTCCTGAACGTT
Done.