Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Cotton_A_26002

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 729

Length: 1215
ACGTcount: A:0.30, C:0.22, G:0.23, T:0.25


Found at i:900 original size:6 final size:6

Alignment explanation


    Indices: 889--921  Score: 66
    Period size: 6  Copynumber: 5.5  Consensus size: 6

        879 TCGAATCACG

                                                  
        889 CCTTCA CCTTCA CCTTCA CCTTCA CCTTCA CCT
          1 CCTTCA CCTTCA CCTTCA CCTTCA CCTTCA CCT

        922 ACTCCAACAT


Statistics
Matches: 27,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   6   27  1.00

ACGTcount: A:0.15, C:0.52, G:0.00, T:0.33


Consensus pattern (6 bp):   
CCTTCA

Done.