Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Cotton_A_31247

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 669

Length: 1116
ACGTcount: A:0.30, C:0.13, G:0.26, T:0.30


Found at i:963 original size:18 final size:18

Alignment explanation


    Indices: 940--979  Score: 62
    Period size: 18  Copynumber: 2.2  Consensus size: 18

        930 GTCAGACATG

                   *         *
        940 GAGGAAAGGGATATAATT
          1 GAGGAAAAGGATATAATC

                              
        958 GAGGAAAAGGATATAATC
          1 GAGGAAAAGGATATAATC

                
        976 GAGG
          1 GAGG

        980 GTGATACTGA


Statistics
Matches: 20,  Mismatches: 2, Indels: 0
        0.91            0.09        0.00

Matches are distributed among these distances:
  18   20  1.00

ACGTcount: A:0.45, C:0.03, G:0.35, T:0.17


Consensus pattern (18 bp):   
GAGGAAAAGGATATAATC
Done.