Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Cotton_A_21637

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 869

Length: 1449
ACGTcount: A:0.32, C:0.18, G:0.28, T:0.22


Found at i:931 original size:15 final size:15

Alignment explanation


    Indices: 913--968  Score: 55
    Period size: 15  Copynumber: 3.9  Consensus size: 15

        903 AGAAGAGGAT

                          *
        913 GACGATGAAGATGAG
          1 GACGATGAAGATGAC

                           
        928 GACGATG-AG--GAC
          1 GACGATGAAGATGAC

              *     *      
        940 GAGGATGATGATGAC
          1 GACGATGAAGATGAC

                    *     
        955 GACGATGATGATGA
          1 GACGATGAAGATGA

        969 GGCAGTGGAT


Statistics
Matches: 34,  Mismatches: 4, Indels: 6
        0.77            0.09        0.14

Matches are distributed among these distances:
  12    8  0.24
  13    1  0.03
  14    2  0.06
  15   23  0.68

ACGTcount: A:0.36, C:0.09, G:0.39, T:0.16


Consensus pattern (15 bp):   
GACGATGAAGATGAC
Done.