Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Cotton_A_39928

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 315

Length: 525
ACGTcount: A:0.37, C:0.19, G:0.18, T:0.25


Found at i:512 original size:21 final size:20

Alignment explanation


    Indices: 478--525  Score: 55
    Period size: 20  Copynumber: 2.4  Consensus size: 20

        468 ACATTCTTGT

                                 
        478 AAAGAGAAAACAAAGAAAAGA
          1 AAAGAGAAAACAAA-AAAAGA

                            *    
        499 AAAGA-AAAAGCAAAAGAAGA
          1 AAAGAGAAAA-CAAAAAAAGA

                    
        519 AAA-AGAA
          1 AAAGAGAA


Statistics
Matches: 24,  Mismatches: 1, Indels: 5
        0.80            0.03        0.17

Matches are distributed among these distances:
  19    1  0.04
  20   14  0.58
  21    9  0.38

ACGTcount: A:0.77, C:0.04, G:0.19, T:0.00


Consensus pattern (20 bp):   
AAAGAGAAAACAAAAAAAGA
Done.