Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Cotton_A_02463

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 732

Length: 1221
ACGTcount: A:0.24, C:0.24, G:0.28, T:0.25


Found at i:821 original size:3 final size:3

Alignment explanation


    Indices: 813--848  Score: 63
    Period size: 3  Copynumber: 12.0  Consensus size: 3

        803 GGCCCCCTCT

                                                    *      
        813 GCA GCA GCA GCA GCA GCA GCA GCA GCA GCA ACA GCA
          1 GCA GCA GCA GCA GCA GCA GCA GCA GCA GCA GCA GCA

        849 ACCCCAGCCA


Statistics
Matches: 31,  Mismatches: 2, Indels: 0
        0.94            0.06        0.00

Matches are distributed among these distances:
   3   31  1.00

ACGTcount: A:0.36, C:0.33, G:0.31, T:0.00


Consensus pattern (3 bp):   
GCA

Done.