Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Cotton_A_28147

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 423

Length: 705
ACGTcount: A:0.33, C:0.17, G:0.25, T:0.25


Found at i:425 original size:13 final size:13

Alignment explanation


    Indices: 407--432  Score: 52
    Period size: 13  Copynumber: 2.0  Consensus size: 13

        397 GAACTTGTTA

                         
        407 AAGAGGCAGAGGC
          1 AAGAGGCAGAGGC

                         
        420 AAGAGGCAGAGGC
          1 AAGAGGCAGAGGC

        433 TCTAGTGGCT


Statistics
Matches: 13,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  13   13  1.00

ACGTcount: A:0.38, C:0.15, G:0.46, T:0.00


Consensus pattern (13 bp):   
AAGAGGCAGAGGC
Done.