Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Cotton_A_17460

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 934

Length: 1557
ACGTcount: A:0.28, C:0.19, G:0.27, T:0.26


Found at i:1483 original size:6 final size:6

Alignment explanation


    Indices: 1473--1525  Score: 97
    Period size: 6  Copynumber: 8.8  Consensus size: 6

       1463 ATGGTGGTTT

                 *                                                 
       1473 CCGAGT CCGAGA CCGAGA CCGAGA CCGAGA CCGAGA CCGAGA CCGAGA
          1 CCGAGA CCGAGA CCGAGA CCGAGA CCGAGA CCGAGA CCGAGA CCGAGA

                 
       1521 CCGAG
          1 CCGAG

       1526 GGAAGGGTTA


Statistics
Matches: 46,  Mismatches: 1, Indels: 0
        0.98            0.02        0.00

Matches are distributed among these distances:
   6   46  1.00

ACGTcount: A:0.30, C:0.34, G:0.34, T:0.02


Consensus pattern (6 bp):   
CCGAGA

Done.