Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Cotton_A_29989

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 289

Length: 483
ACGTcount: A:0.24, C:0.15, G:0.34, T:0.27


Found at i:344 original size:21 final size:21

Alignment explanation


    Indices: 298--345  Score: 53
    Period size: 21  Copynumber: 2.3  Consensus size: 21

        288 AGGTGGCAAG

                             *   
        298 TATGGTGGTAGGGGTGATCGT
          1 TATGGTGGTAGGGGTGACCGT

            *                *    
        319 CATGGTGG-AGGTGGTGGCCGT
          1 TATGGTGGTAGG-GGTGACCGT

                  
        340 TATGGT
          1 TATGGT

        346 CCTGATCGGA


Statistics
Matches: 22,  Mismatches: 4, Indels: 2
        0.79            0.14        0.07

Matches are distributed among these distances:
  20    3  0.14
  21   19  0.86

ACGTcount: A:0.12, C:0.08, G:0.48, T:0.31


Consensus pattern (21 bp):   
TATGGTGGTAGGGGTGACCGT
Done.