Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Cotton_A_04296

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 867

Length: 1446
ACGTcount: A:0.34, C:0.17, G:0.21, T:0.28


Found at i:244 original size:2 final size:2

Alignment explanation


    Indices: 237--274  Score: 58
    Period size: 2  Copynumber: 18.5  Consensus size: 2

        227 TTGGTCAATT

                                                *                   
        237 TA TA TA TA TA TA TA TA TA TA TA TA CA TA TA TA TGA TA T
          1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T-A TA T

        275 TCATATTTGA


Statistics
Matches: 33,  Mismatches: 2, Indels: 2
        0.89            0.05        0.05

Matches are distributed among these distances:
   2   31  0.94
   3    2  0.06

ACGTcount: A:0.47, C:0.03, G:0.03, T:0.47


Consensus pattern (2 bp):   
TA

Done.