Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Cotton_A_25459

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1911
ACGTcount: A:0.26, C:0.19, G:0.24, T:0.31


Found at i:997 original size:6 final size:6

Alignment explanation


    Indices: 987--1020  Score: 50
    Period size: 6  Copynumber: 5.7  Consensus size: 6

        977 GCCTTGACCG

                 *      *                          
        987 TTCTAG TTCTAG TTCTAC TTCTAC TTCTAC TTCT
          1 TTCTAC TTCTAC TTCTAC TTCTAC TTCTAC TTCT

       1021 CTGAATGGAG


Statistics
Matches: 27,  Mismatches: 1, Indels: 0
        0.96            0.04        0.00

Matches are distributed among these distances:
   6   27  1.00

ACGTcount: A:0.15, C:0.26, G:0.06, T:0.53


Consensus pattern (6 bp):   
TTCTAC

Done.