Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Cotton_A_07471

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 383

Length: 639
ACGTcount: A:0.20, C:0.33, G:0.18, T:0.28


Found at i:248 original size:30 final size:30

Alignment explanation


    Indices: 134--239  Score: 176
    Period size: 30  Copynumber: 3.5  Consensus size: 30

        124 AAATCTCCTT

                                          
        134 CATCATCGCCTCCTGCGAGTTCTCCAACAA
          1 CATCATCGCCTCCTGCGAGTTCTCCAACAA

              *                           
        164 CAGCATCGCCTCCTGCGAGTTCTCCAACAA
          1 CATCATCGCCTCCTGCGAGTTCTCCAACAA

                         *             *  
        194 CATCATCGCCTCCCGCGAGTTCTCCAAAAA
          1 CATCATCGCCTCCTGCGAGTTCTCCAACAA

                      *     
        224 CATCATCGCCGCCTGC
          1 CATCATCGCCTCCTGC

        240 AAAATCTCCG


Statistics
Matches: 70,  Mismatches: 6, Indels: 0
        0.92            0.08        0.00

Matches are distributed among these distances:
  30   70  1.00

ACGTcount: A:0.23, C:0.42, G:0.15, T:0.21


Consensus pattern (30 bp):   
CATCATCGCCTCCTGCGAGTTCTCCAACAA

Done.