Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Cotton_A_10382

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 810

Length: 1350
ACGTcount: A:0.33, C:0.16, G:0.27, T:0.25


Found at i:868 original size:15 final size:15

Alignment explanation


    Indices: 848--884  Score: 74
    Period size: 15  Copynumber: 2.5  Consensus size: 15

        838 AGGCAACGGC

                           
        848 ATGATGATGACGATG
          1 ATGATGATGACGATG

                           
        863 ATGATGATGACGATG
          1 ATGATGATGACGATG

                   
        878 ATGATGA
          1 ATGATGA

        885 CATGGAAACT


Statistics
Matches: 22,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  15   22  1.00

ACGTcount: A:0.35, C:0.05, G:0.32, T:0.27


Consensus pattern (15 bp):   
ATGATGATGACGATG

Found at i:900 original size:3 final size:3

Alignment explanation


    Indices: 848--884  Score: 56
    Period size: 3  Copynumber: 12.3  Consensus size: 3

        838 AGGCAACGGC

                         *                   *               
        848 ATG ATG ATG ACG ATG ATG ATG ATG ACG ATG ATG ATG A
          1 ATG ATG ATG ATG ATG ATG ATG ATG ATG ATG ATG ATG A

        885 CATGGAAACT


Statistics
Matches: 30,  Mismatches: 4, Indels: 0
        0.88            0.12        0.00

Matches are distributed among these distances:
   3   30  1.00

ACGTcount: A:0.35, C:0.05, G:0.32, T:0.27


Consensus pattern (3 bp):   
ATG
Done.