Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Cotton_A_07966

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3711
ACGTcount: A:0.29, C:0.19, G:0.24, T:0.27


Found at i:3524 original size:14 final size:14

Alignment explanation


    Indices: 3505--3540  Score: 56
    Period size: 13  Copynumber: 2.6  Consensus size: 14

       3495 TGGTTCAAGA

                          
       3505 GCTGAAAGGCAGCG
          1 GCTGAAAGGCAGCG

                        * 
       3519 GCTGAAA-GCAGTG
          1 GCTGAAAGGCAGCG

                     
       3532 GCTGAAAGG
          1 GCTGAAAGG

       3541 GAGAAGGTGG


Statistics
Matches: 20,  Mismatches: 1, Indels: 2
        0.87            0.04        0.09

Matches are distributed among these distances:
  13   12  0.60
  14    8  0.40

ACGTcount: A:0.31, C:0.17, G:0.42, T:0.11


Consensus pattern (14 bp):   
GCTGAAAGGCAGCG

Done.