Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Cotton_A_30904

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 616

Length: 1027
ACGTcount: A:0.33, C:0.19, G:0.25, T:0.24


Found at i:60 original size:21 final size:20

Alignment explanation


    Indices: 32--75  Score: 52
    Period size: 21  Copynumber: 2.1  Consensus size: 20

         22 CAGGATCCTG

                     *  **      
         32 GAAAAGAACTTCGGCAATCT
          1 GAAAAGAACCTCAACAATCT

                                 
         52 GAAACAGAACCTCAACAATCT
          1 GAAA-AGAACCTCAACAATCT

               
         73 GAA
          1 GAA

         76 CAAGTCTGCA


Statistics
Matches: 20,  Mismatches: 3, Indels: 1
        0.83            0.12        0.04

Matches are distributed among these distances:
  20    4  0.20
  21   16  0.80

ACGTcount: A:0.45, C:0.23, G:0.16, T:0.16


Consensus pattern (20 bp):   
GAAAAGAACCTCAACAATCT
Done.