Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Cotton_A_37117

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 430

Length: 717
ACGTcount: A:0.36, C:0.16, G:0.23, T:0.25


Found at i:543 original size:3 final size:3

Alignment explanation


    Indices: 529--560  Score: 55
    Period size: 3  Copynumber: 10.7  Consensus size: 3

        519 CCAAGAAGCA

                  *                                   
        529 GAT GAC GAT GAT GAT GAT GAT GAT GAT GAT GA
          1 GAT GAT GAT GAT GAT GAT GAT GAT GAT GAT GA

        561 AGTTTCAAGG


Statistics
Matches: 27,  Mismatches: 2, Indels: 0
        0.93            0.07        0.00

Matches are distributed among these distances:
   3   27  1.00

ACGTcount: A:0.34, C:0.03, G:0.34, T:0.28


Consensus pattern (3 bp):   
GAT

Done.