Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Cotton_A_01815

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 900

Length: 1500
ACGTcount: A:0.34, C:0.16, G:0.28, T:0.22


Found at i:292 original size:27 final size:26

Alignment explanation


    Indices: 238--293  Score: 78
    Period size: 27  Copynumber: 2.1  Consensus size: 26

        228 TCTGACTCCA

                                *     
        238 AGGGAGAGTGAGGAGGAGAGGAGAAG
          1 AGGGAGAGTGAGGAGGAGAGAAGAAG

                                        
        264 AGGGAGAGTGGAGGAGGAAGAGAAG-AG
          1 AGGGAGAGT-GAGGAGG-AGAGAAGAAG

               
        291 AGG
          1 AGG

        294 AAATACTCAT


Statistics
Matches: 27,  Mismatches: 1, Indels: 3
        0.87            0.03        0.10

Matches are distributed among these distances:
  26    9  0.33
  27   12  0.44
  28    6  0.22

ACGTcount: A:0.39, C:0.00, G:0.57, T:0.04


Consensus pattern (26 bp):   
AGGGAGAGTGAGGAGGAGAGAAGAAG
Done.