Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Cotton_A_05039

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 631

Length: 1053
ACGTcount: A:0.27, C:0.27, G:0.19, T:0.26


Found at i:126 original size:6 final size:6

Alignment explanation


    Indices: 107--140  Score: 59
    Period size: 6  Copynumber: 5.7  Consensus size: 6

         97 GTTTCCTCCT

                      *                            
        107 CTTCCC CTTTCC CTTCCC CTTCCC CTTCCC CTTC
          1 CTTCCC CTTCCC CTTCCC CTTCCC CTTCCC CTTC

        141 TTCTCTTCCT


Statistics
Matches: 26,  Mismatches: 2, Indels: 0
        0.93            0.07        0.00

Matches are distributed among these distances:
   6   26  1.00

ACGTcount: A:0.00, C:0.62, G:0.00, T:0.38


Consensus pattern (6 bp):   
CTTCCC
Done.