Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Cotton_A_09199

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 536

Length: 894
ACGTcount: A:0.32, C:0.25, G:0.16, T:0.28


Found at i:517 original size:3 final size:3

Alignment explanation


    Indices: 509--564  Score: 76
    Period size: 3  Copynumber: 18.7  Consensus size: 3

        499 TCTAAGGACC

                             *          *       *       *                  
        509 ATA ATA ATA ATA ACA ATA ATA GTA ATA GTA ATA GTA ATA ATA ATA ATA
          1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA

                      
        557 ATA ATA AT
          1 ATA ATA AT

        565 TCTTTGTGGA


Statistics
Matches: 45,  Mismatches: 8, Indels: 0
        0.85            0.15        0.00

Matches are distributed among these distances:
   3   45  1.00

ACGTcount: A:0.61, C:0.02, G:0.05, T:0.32


Consensus pattern (3 bp):   
ATA

Done.