Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Cotton_A_36226

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2607
ACGTcount: A:0.28, C:0.20, G:0.24, T:0.28


Found at i:2519 original size:18 final size:18

Alignment explanation


    Indices: 2496--2537  Score: 57
    Period size: 18  Copynumber: 2.3  Consensus size: 18

       2486 GCTTTGGTGC

                    *         
       2496 AAGAGGAAGAGGCAGAGG
          1 AAGAGGAACAGGCAGAGG

                        *     
       2514 AAGAGGAACAGGTAGAGG
          1 AAGAGGAACAGGCAGAGG

            *     
       2532 TAGAGG
          1 AAGAGG

       2538 TGGATATAGG


Statistics
Matches: 21,  Mismatches: 3, Indels: 0
        0.88            0.12        0.00

Matches are distributed among these distances:
  18   21  1.00

ACGTcount: A:0.43, C:0.05, G:0.48, T:0.05


Consensus pattern (18 bp):   
AAGAGGAACAGGCAGAGG
Done.