Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Cotton_A_21382
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 1829
ACGTcount: A:0.30, C:0.21, G:0.25, T:0.23
Found at i:398 original size:228 final size:228
Alignment explanation
Indices: 1--1789 Score: 1324
Period size: 228 Copynumber: 7.9 Consensus size: 228
* * * * *
1 ATGCAGATCTTTGTGAAAACCCTTACTGGTAAGACCATCACCCTTGAGGTAGAAAGTTCTGATAC
1 ATGCAGATTTTTGTGAAAACCCTTACTGGAAAGACCATCACCCTGGAGGTGGAGAGTTCTGATAC
* * * * * * * * * *
66 TATCGATAATGTCAAGGCTAAAATCCAAGACAAAGAAGGGATTCCTCCTGACCAACAAAGGCTT-
66 AATTGATAATGTCAAGGCCAAGATCCAAGACAAGGAAGGGATCCCACCAGACCAGCAGAGG-TTG
* * * * * *
130 ATCTTTGCCGGAAAACAACTTGAGGATGGCCGAACTCTTGCCGACTACAATATCCA-AAAGGAGT
130 ATTTTTGCCGGAAAACAGCTTGAAGATGGCCGAACTCTTGCAGATTACAACATCCAGAAA-GAGT
* * *
194 CCACCCTCCACCTAGTGCTTCGTCTAAGGGGTGGC
194 CTACCCTCCACCTGGTGCTTCGTCTTAGGGGTGGC
* * * * * *
229 ATGCAGATATTCGTGAAAACTCTTACTGGCAAGACCATCACCCTCGAGGTGGAAAGTTCTGATAC
1 ATGCAGATTTTTGTGAAAACCCTTACTGGAAAGACCATCACCCTGGAGGTGGAGAGTTCTGATAC
*
294 AATTGATAATGTCAAGGCCAAGATCCAAGACAAGGAAGGGATCCCACCAGACCAACAGAGGCTT-
66 AATTGATAATGTCAAGGCCAAGATCCAAGACAAGGAAGGGATCCCACCAGACCAGCAGAGG-TTG
* * *
358 ATCTTTGCCGGTAAACAGCTTGAAGATGGCCGAACTCTTGCGGATTACAACATCCAGAAAGAGTC
130 ATTTTTGCCGGAAAACAGCTTGAAGATGGCCGAACTCTTGCAGATTACAACATCCAGAAAGAGTC
* * *
423 TACCCTCCACCTTGTCCTTCGTCTTAGGGGTGGG
195 TACCCTCCACCTGGTGCTTCGTCTTAGGGGTGGC
* * * * * *
457 ATGCAGATCTTTGTAAAAACCCTTACTGGTAAGACCATCACCCTTGAGGTGGAGAGCTCCGATAC
1 ATGCAGATTTTTGTGAAAACCCTTACTGGAAAGACCATCACCCTGGAGGTGGAGAGTTCTGATAC
* * * *
522 TATCGATAATGTCAAGGCCAAGATCCAAGACAAGGAAGGGATTCCACCAGATCAGCAGAGGTTGA
66 AATTGATAATGTCAAGGCCAAGATCCAAGACAAGGAAGGGATCCCACCAGACCAGCAGAGGTTGA
* * ** * *
587 TTTTTGCCGGAAAACAACTCGAAGATGGTAGGACACTTGCAGATTACAACATCCAGAAAGAGTCT
131 TTTTTGCCGGAAAACAGCTTGAAGATGGCCGAACTCTTGCAGATTACAACATCCAGAAAGAGTCT
* * *
652 ACCCTCCACCTTGTCCTTCGTCTTAGGGGTGGG
196 ACCCTCCACCTGGTGCTTCGTCTTAGGGGTGGC
* * * * * **
685 ATGCAGATTTTTGT-AAAACCCTCACCGGAAAAACTATTACGTTGGAGGTGGAGAGTTCTGATAC
1 ATGCAGATTTTTGTGAAAACCCTTACTGGAAAGACCATCACCCTGGAGGTGGAGAGTTCTGATAC
* * * * * **
749 GATTGATAATGTTAAGGCCAAGATTCAGGATAAGGAAGGGATCCCACTGGACCAGCAGAGGTTGA
66 AATTGATAATGTCAAGGCCAAGATCCAAGACAAGGAAGGGATCCCACCAGACCAGCAGAGGTTGA
* * * * * * * * *
814 TTTTTGCTGGAAAGCAGCTTGAAGATGGCCGAACTCTTGCGGACTATAACATTCAGAAGGAATCG
131 TTTTTGCCGGAAAACAGCTTGAAGATGGCCGAACTCTTGCAGATTACAACATCCAGAAAGAGTCT
** ** *
879 ACCCTCCATTTGGTG-TTACGTCTCCGTGGTGGC
196 ACCCTCCACCTGGTGCTT-CGTCTTAGGGGTGGC
* * * * * * * ** * * *
912 ATGCAAATTTTTGTGAAGACTCTCACCGGAAAGACTATTACTTTGGAAGTTGAGAGTTCTGACAC
1 ATGCAGATTTTTGTGAAAACCCTTACTGGAAAGACCATCACCCTGGAGGTGGAGAGTTCTGATAC
* * * * * * * *
977 CATTGACAATGTAAAAGCTAAGATCCAGGACAAGGAAGGGATTCCACCAGATCAGCAGAGGTTGA
66 AATTGATAATGTCAAGGCCAAGATCCAAGACAAGGAAGGGATCCCACCAGACCAGCAGAGGTTGA
* * * ** * * * *
1042 TTTTTGCTGGCAAACAGCTCGAAGATGGTAGGACACTTGCAGATTATAATATCCAGAAAGAGTCT
131 TTTTTGCCGGAAAACAGCTTGAAGATGGCCGAACTCTTGCAGATTACAACATCCAGAAAGAGTCT
* * * * ** * *
1107 ACCCTTCACTTGGTGCTCCGACTGCGTGGTGGA
196 ACCCTCCACCTGGTGCTTCGTCTTAGGGGTGGC
* * * ** * * *
1140 ATGCAGATTTTTGTGAAAA-CTTTGACTGGAAAAACTATCACATTGGAGGTGGAGAGCTCAGACA
1 ATGCAGATTTTTGTGAAAACCCTT-ACTGGAAAGACCATCACCCTGGAGGTGGAGAGTTCTGATA
* * *
1204 CAATTGATAATGTGAAGGCCAAGATCCAAGATAAGG-AGGGTATCCCACCTGACCAGCAGAGGTT
65 CAATTGATAATGTCAAGGCCAAGATCCAAGACAAGGAAGGG-ATCCCACCAGACCAGCAGAGGTT
* * * * ** * * * * *
1268 GATTTTTGCTGGAAAGCAGCTCGAGGATGGGAGGACCCTTGCGGATTATAACATCCA-AAAGGAA
129 GATTTTTGCCGGAAAACAGCTTGAAGATGGCCGAACTCTTGCAGATTACAACATCCAGAAA-GAG
* * ** * * * * * *
1332 TCGACCCTGCATTTGGT-TTTGCGACTTCGAGGAGGG
193 TCTACCCTCCACCTGGTGCTT-CGTCTTAGGGGTGGC
* * * * * * * *
1368 ATGCAGATATTCGTGAAGA-CCTTGACCGGTAAA-ACCATCACCCTGGAGGTCGAGAGCTCGGAC
1 ATGCAGATTTTTGTGAAAACCCTT-ACTGG-AAAGACCATCACCCTGGAGGTGGAGAGTTCTGAT
* * * * * * * * * * *
1431 ACCATTGACAATGTGAAAGCGAAAATTCAGGACAAGGAGGGGATTCCTCCAGACCAGCAGAGGTT
64 ACAATTGATAATGTCAAGGCCAAGATCCAAGACAAGGAAGGGATCCCACCAGACCAGCAGAGGTT
* * * * ** * * * * *
1496 GATTTTTGCTGGAAAGCAGCTCGAGGATGGGAGGACCCTTGCGGATTATAACATCCA-AAAGGAA
129 GATTTTTGCCGGAAAACAGCTTGAAGATGGCCGAACTCTTGCAGATTACAACATCCAGAAA-GAG
* * ** * * * * * *
1560 TCGACCCTGCATTTGGT-TTTGCGACTTCGAGGAGGG
193 TCTACCCTCCACCTGGTGCTT-CGTCTTAGGGGTGGC
* * * * * * * *
1596 ATGCAGATATTCGTGAAGA-CCTTGACCGGGAAA-ACAATCACCCTGGAGGTGGAGAGCTCAGAC
1 ATGCAGATTTTTGTGAAAACCCTT-A-CTGGAAAGACCATCACCCTGGAGGTGGAGAGTTCTGAT
* * * * * * * * * * *
1659 ACGATCGACAATGTGAAAGCGAAAATTCAGGACAAGGAGGGGATTCCACCAGACCAGCAGAGGTT
64 ACAATTGATAATGTCAAGGCCAAGATCCAAGACAAGGAAGGGATCCCACCAGACCAGCAGAGGTT
* * * * * * * * * * *
1724 GATATTTGCTGGTAAGCAG-TTAGAGGATGGTCGAACTCTAGCTGACTACAATATCCAGAAGGAG
129 GATTTTTGCCGGAAAACAGCTT-GAAGATGGCCGAACTCTTGCAGATTACAACATCCAGAAAGAG
1788 TC
193 TC
1790 CACACTGCAT
Statistics
Matches: 1331, Mismatches: 216, Indels: 28
0.85 0.14 0.02
Matches are distributed among these distances:
226 2 0.00
227 191 0.14
228 1123 0.84
229 15 0.01
ACGTcount: A:0.30, C:0.21, G:0.26, T:0.23
Consensus pattern (228 bp):
ATGCAGATTTTTGTGAAAACCCTTACTGGAAAGACCATCACCCTGGAGGTGGAGAGTTCTGATAC
AATTGATAATGTCAAGGCCAAGATCCAAGACAAGGAAGGGATCCCACCAGACCAGCAGAGGTTGA
TTTTTGCCGGAAAACAGCTTGAAGATGGCCGAACTCTTGCAGATTACAACATCCAGAAAGAGTCT
ACCCTCCACCTGGTGCTTCGTCTTAGGGGTGGC
Found at i:1335 original size:456 final size:453
Alignment explanation
Indices: 223--1762 Score: 1565
Period size: 456 Copynumber: 3.4 Consensus size: 453
213 TCGTCTAAGG
* * * * * * * *
223 GGTGGCATGCAGATATTCGTGAAAACTCTT-ACTGGCAAGACCATCACCCTCGAGGTGGAAAGTT
1 GGTGGGATGCAGATATTCGTGAAAAC-CTTGACCGGAAAAACTATCACCCTGGAGGTGGAGAGCT
* * * *
287 CTGATACAATTGATAATGTCAAGGCCAAGATCCAAGACAAGGAAGGGATCCCACCAGACCAACAG
65 CAGACACAATTGATAATGTGAAGGCCAAGATCCAAGACAAGGAAGGGATCCCACCAGACCAGCAG
* * *
352 AGGCTT-ATCTTTGCCGGTAAA-CAGCTTGAAGATGGCCGAACTCTTGCGGATTACAACATCCAG
130 AGG-TTGATTTTTGCTGG-AAAGCAGCTTGAAGATGGCCGAACTCTTGCGGATTATAACATCCA-
* * * * * * * *
415 AAA-GAGTCTACCCTCCACCTT-GTCCTTCGTCTTAGGGGTGGGATGCAGATCTTTGTAAAAACC
192 AAAGGAATCGACCCTCCA-TTTGGT-CTTCGTCTTCGAGGTGGGATGCAGATATTTGTGAAGA-C
* * * * * * * * * *
478 CTTACTGGTAAGACCATCACCCTT-GAGGTGGAGAGCTCCGATACTATCGATAATGTCAAGGCCA
254 CTCACCGGAAAGACCATCA-CCTTGGAGGTCGAGAGCTCCGACACCATTGACAATGTAAAAGCCA
* * *
542 AGATCCAAGACAAGGAAGGGATTCCACCAGATCAGCAGAGGTTGATTTTTGCCGGAAAACAACTC
318 AGATCCAGGACAAGGAAGGGATTCCACCAGATCAGCAGAGGTTGATTTTTGCTGG-AAACAGCTC
* *
607 GAAGATGGTAGGACACTTGCAGATTACAACATCCAGAAAGAGTCTACCCTCCACCTT-GTCCTTC
382 GAAGATGGTAGGACACTTGCAGATTATAACATCCAGAAAGAGTCTACCCTCCA-CTTGGTCCTCC
* * *
671 GTCTTAGG
446 GACTTCGA
* * * * * ** *
679 GGTGGGATGCAGATTTTTGT-AAAACCCTCACCGGAAAAACTATTACGTTGGAGGTGGAGAGTTC
1 GGTGGGATGCAGATATTCGTGAAAACCTTGACCGGAAAAACTATCACCCTGGAGGTGGAGAGCTC
* * * * * * * **
743 TGATACGATTGATAATGTTAAGGCCAAGATTCAGGATAAGGAAGGGATCCCACTGGACCAGCAGA
66 AGACACAATTGATAATGTGAAGGCCAAGATCCAAGACAAGGAAGGGATCCCACCAGACCAGCAGA
* * *
808 GGTTGATTTTTGCTGGAAAGCAGCTTGAAGATGGCCGAACTCTTGCGGACTATAACATTCAGAAG
131 GGTTGATTTTTGCTGGAAAGCAGCTTGAAGATGGCCGAACTCTTGCGGATTATAACATCCAAAAG
* * * * * *
873 GAATCGACCCTCCATTTGGTGTTACGTCTCCGTGGTGGCATGCAAATTTTTGTGAAGACTCTCAC
196 GAATCGACCCTCCATTTGGTCTT-CGTCTTCGAGGTGGGATGCAGATATTTGTGAAGAC-CTCAC
* * * * * * * *
938 CGGAAAGACTATTACTTTGGAAGTTGAGAGTTCTGACACCATTGACAATGTAAAAGCTAAGATCC
259 CGGAAAGACCATCACCTTGGAGGTCGAGAGCTCCGACACCATTGACAATGTAAAAGCCAAGATCC
1003 AGGACAAGGAAGGGATTCCACCAGATCAGCAGAGGTTGATTTTTGCTGGCAAACAGCTCGAAGAT
324 AGGACAAGGAAGGGATTCCACCAGATCAGCAGAGGTTGATTTTTGCTGG-AAACAGCTCGAAGAT
* * * *
1068 GGTAGGACACTTGCAGATTATAATATCCAGAAAGAGTCTACCCTTCACTTGGTGCTCCGACTGCG
388 GGTAGGACACTTGCAGATTATAACATCCAGAAAGAGTCTACCCTCCACTTGGTCCTCCGACTTCG
*
1133 T
453 A
* * * * * **
1134 GGTGGAATGCAGATTTTTGTGAAAACTTTGACTGGAAAAACTATCACATTGGAGGTGGAGAGCTC
1 GGTGGGATGCAGATATTCGTGAAAACCTTGACCGGAAAAACTATCACCCTGGAGGTGGAGAGCTC
* *
1199 AGACACAATTGATAATGTGAAGGCCAAGATCCAAGATAAGG-AGGGTATCCCACCTGACCAGCAG
66 AGACACAATTGATAATGTGAAGGCCAAGATCCAAGACAAGGAAGGG-ATCCCACCAGACCAGCAG
* * ** * *
1263 AGGTTGATTTTTGCTGGAAAGCAGCTCGAGGATGGGAGGACCCTTGCGGATTATAACATCCAAAA
130 AGGTTGATTTTTGCTGGAAAGCAGCTTGAAGATGGCCGAACTCTTGCGGATTATAACATCCAAAA
* * * * * *
1328 GGAATCGACCCTGCATTTGGTTTTGCGACTTCGAGGAGGGATGCAGATATTCGTGAAGACCTTGA
195 GGAATCGACCCTCCATTTGGTCTT-CGTCTTCGAGGTGGGATGCAGATATTTGTGAAGACC-TCA
* * * * *
1393 CCGGTAAA-ACCATCACCCTGGAGGTCGAGAGCTCGGACACCATTGACAATGTGAAAGCGAAAAT
258 CCGG-AAAGACCATCACCTTGGAGGTCGAGAGCTCCGACACCATTGACAATGTAAAAGCCAAGAT
* * * * *
1457 TCAGGACAAGGAGGGGATTCCTCCAGACCAGCAGAGGTTGATTTTTGCTGGAAAGCAGCTCGAGG
322 CCAGGACAAGGAAGGGATTCCACCAGATCAGCAGAGGTTGATTTTTGCTGGAAA-CAGCTCGAAG
* * * * * * * ** *
1522 ATGGGAGGACCCTTGCGGATTATAACATCCA-AAAGGAATCGACCCTGCATTTGGTTTTGCGACT
386 ATGGTAGGACACTTGCAGATTATAACATCCAGAAA-GAGTCTACCCTCCACTTGGTCCTCCGACT
1586 TCGA
450 TCGA
* * * *
1590 GGAGGGATGCAGATATTCGTGAAGACCTTGACCGGGAAAACAATCACCCTGGAGGTGGAGAGCTC
1 GGTGGGATGCAGATATTCGTGAAAACCTTGACCGGAAAAACTATCACCCTGGAGGTGGAGAGCTC
* * * * * * * * * *
1655 AGACACGATCGACAATGTGAAAGCGAAAATTCAGGACAAGGAGGGGATTCCACCAGACCAGCAGA
66 AGACACAATTGATAATGTGAAGGCCAAGATCCAAGACAAGGAAGGGATCCCACCAGACCAGCAGA
* * * *
1720 GGTTGATATTTGCTGGTAAGCAG-TTAGAGGATGGTCGAACTCT
131 GGTTGATTTTTGCTGGAAAGCAGCTT-GAAGATGGCCGAACTCT
1763 AGCTGACTAC
Statistics
Matches: 902, Mismatches: 165, Indels: 34
0.82 0.15 0.03
Matches are distributed among these distances:
454 20 0.02
455 371 0.41
456 505 0.56
457 6 0.01
ACGTcount: A:0.30, C:0.21, G:0.26, T:0.23
Consensus pattern (453 bp):
GGTGGGATGCAGATATTCGTGAAAACCTTGACCGGAAAAACTATCACCCTGGAGGTGGAGAGCTC
AGACACAATTGATAATGTGAAGGCCAAGATCCAAGACAAGGAAGGGATCCCACCAGACCAGCAGA
GGTTGATTTTTGCTGGAAAGCAGCTTGAAGATGGCCGAACTCTTGCGGATTATAACATCCAAAAG
GAATCGACCCTCCATTTGGTCTTCGTCTTCGAGGTGGGATGCAGATATTTGTGAAGACCTCACCG
GAAAGACCATCACCTTGGAGGTCGAGAGCTCCGACACCATTGACAATGTAAAAGCCAAGATCCAG
GACAAGGAAGGGATTCCACCAGATCAGCAGAGGTTGATTTTTGCTGGAAACAGCTCGAAGATGGT
AGGACACTTGCAGATTATAACATCCAGAAAGAGTCTACCCTCCACTTGGTCCTCCGACTTCGA
Found at i:1821 original size:684 final size:681
Alignment explanation
Indices: 226--1822 Score: 1646
Period size: 683 Copynumber: 2.3 Consensus size: 681
216 TCTAAGGGGT
* * * * * * * * * * *
226 GGCATGCAGATATTCGTGAAAACTCTTACTGGCAAGACCATCACCCTCGAGGTGGAAAGTTCTGA
1 GGCATGCAAATATTCGTGAAGACTCTCACCGGAAAGACAATCACCCTGGAAGTGGAGAGCTCAGA
* * * * * * * * * * *
291 TACAATTGATAATGTCAAGGCCAAGATCCAAGACAAGGAAGGGATCCCACCAGACCAACAGAGGC
66 CACCATCGACAATGTAAAAGCGAAAATCCAGGACAAGGAAGGGATTCCACCAGACCAGCAGAGG-
* * * * *
356 TT-ATCTTTGCCGGTAAACAGCTTGAAGATGGCCGAACTCTTGCGGATTACAACATCCAGAAAGA
130 TTGATATTTGCTGGTAAACAG-TTGAAGATGGTCGAACTCTTGCAGATTACAATATCCAGAAAGA
* ** * *
420 GTCTACCCTCCACCTTGTCCTTCGTCTTAGGGGTGGGATGCAGATCTTTGTAAAAACCCTTACTG
194 GTCTACCCTCCA-CTTGTCCTTCGACTCCGTGGTGGAATGCAGATCTTTGTAAAAACCCTTACTG
* * * * * *
485 GTAAGACCATCACCCTTGAGGTGGAGAGCTCCGATACTATCGATAATGTCAAGGCCAAGATCCAA
258 GAAAAACCATCACCATTGAGGTGGAGAGCTCAGACACAATCGATAATGTCAAGGCCAAGATCCAA
* *
550 GACAAGGAAGGGATTCCACCAGATCAGCAGAGGTTGATTTTTGCCGGAAAACAACTCGAAGATGG
323 GACAAGGAAGGGATCCCACCAGACCAGCAGAGGTTGATTTTTGCCGGAAAACAACTCGAAGATGG
* * * * *
615 TAGGACACTTGCAGATTACAACATCCAGAAAGAGTCTACCCTCCACCTTGTCCTTCGTCTTAGGG
388 GAGGACACTTGCAGATTACAACATCCAGAAAGAATCGACCCTCCACCTTGTCCTTCGACTTAGAG
* * * * * ** * * *
680 GTGGGATGCAGATTTTTGTAAAACCCTCACCGGAAAAACTATTACGTTGGAGGTGGAGAGTTCTG
453 GAGGGATGCAGATATTCGTAAAACCCTCACCGGAAAAACCATCACCCTGGAGGTCGAGAGCTCGG
* * * * * * * **
745 ATACGATTGATAATGTTAAGGCCAAGATTCAGGATAAGGAAGGGATCCCACTGGACCAGCAGAGG
518 ACACCATTGACAATGTGAAAGCCAAAATTCAGGACAAGGAAGGGATCCCACCAGACCAGCAGAGG
* * * * *
810 TTGATTTTTGCTGGAAAGCAGCTTGAAGATGGCCGAACTCTTGCGGACTATAACATTCAGAAGGA
583 TTGATTTTTGCTGGAAAGCAGCTCGAAGATGGCAGAACCCTTGCGGACTATAACATCCAAAAGGA
* * *
875 ATCGACCCTCCATTTGGTGTTACGTCTCCGTGGT
648 ATCGACCCTCCATTTGGTGTTACGACTCCGAGGA
* * * * ** * * *
909 GGCATGCAAATTTTTGTGAAGACTCTCACCGGAAAGACTATTACTTTGGAAGTTGAGAGTTCTGA
1 GGCATGCAAATATTCGTGAAGACTCTCACCGGAAAGACAATCACCCTGGAAGTGGAGAGCTCAGA
* * * *
974 CACCATTGACAATGTAAAAGCTAAGATCCAGGACAAGGAAGGGATTCCACCAGATCAGCAGAGGT
66 CACCATCGACAATGTAAAAGCGAAAATCCAGGACAAGGAAGGGATTCCACCAGACCAGCAGAGGT
* * * * * * *
1039 TGATTTTTGCTGGCAAACAGCTCGAAGATGGTAGGACACTTGCAGATTATAATATCCAGAAAGAG
131 TGATATTTGCTGGTAAACAG-TTGAAGATGGTCGAACTCTTGCAGATTACAATATCCAGAAAGAG
* * * * * * *
1104 TCTACCCTTCACTTGGTGCTCCGACTGCGTGGTGGAATGCAGATTTTTGTGAAAA-CTTTGACTG
195 TCTACCCTCCACTT-GTCCTTCGACTCCGTGGTGGAATGCAGATCTTTGTAAAAACCCTT-ACTG
* * *
1168 GAAAAACTATCA-CATTGGAGGTGGAGAGCTCAGACACAATTGATAATGTGAAGGCCAAGATCCA
258 GAAAAACCATCACCATT-GAGGTGGAGAGCTCAGACACAATCGATAATGTCAAGGCCAAGATCCA
* * * * * *
1232 AGATAAGG-AGGGTATCCCACCTGACCAGCAGAGGTTGATTTTTGCTGGAAAGCAGCTCGAGGAT
322 AGACAAGGAAGGG-ATCCCACCAGACCAGCAGAGGTTGATTTTTGCCGGAAAACAACTCGAAGAT
* * * * * *
1296 GGGAGGACCCTTGCGGATTATAACATCCA-AAAGGAATCGACCCTGCA-TTTGGT-TTTGCGACT
386 GGGAGGACACTTGCAGATTACAACATCCAGAAA-GAATCGACCCTCCACCTT-GTCCTT-CGACT
* * * * *
1358 TCGAGGAGGGATGCAGATATTCGTGAAGACCTTGACCGGTAAAACCATCACCCTGGAGGTCGAGA
448 TAGAGGAGGGATGCAGATATTCGT-AAAACCCTCACCGGAAAAACCATCACCCTGGAGGTCGAGA
* * * *
1423 GCTCGGACACCATTGACAATGTGAAAGCGAAAATTCAGGACAAGGAGGGGATTCCTCCAGACCAG
512 GCTCGGACACCATTGACAATGTGAAAGCCAAAATTCAGGACAAGGAAGGGATCCCACCAGACCAG
* * * *
1488 CAGAGGTTGATTTTTGCTGGAAAGCAGCTCGAGGATGGGAGGACCCTTGCGGATTATAACATCCA
577 CAGAGGTTGATTTTTGCTGGAAAGCAGCTCGAAGATGGCAGAACCCTTGCGGACTATAACATCCA
* * * *
1553 AAAGGAATCGACCCTGCATTTGGTTTTGCGACTTCGAGGA
642 AAAGGAATCGACCCTCCATTTGGTGTTACGACTCCGAGGA
* * * *
1593 GGGATGCAGATATTCGTGAAGAC-CTTGACCGGGAAA-ACAATCACCCTGGAGGTGGAGAGCTCA
1 GGCATGCAAATATTCGTGAAGACTC-TCACC-GGAAAGACAATCACCCTGGAAGTGGAGAGCTCA
* * * *
1656 GACACGATCGACAATGTGAAAGCGAAAATTCAGGACAAGGAGGGGATTCCACCAGACCAGCAGAG
64 GACACCATCGACAATGTAAAAGCGAAAATCCAGGACAAGGAAGGGATTCCACCAGACCAGCAGAG
* * * * * *
1721 GTTGATATTTGCTGGTAAGCAGTTAGAGGATGGTCGAACTCTAGCTGACTACAATATCCAGAAGG
129 GTTGATATTTGCTGGTAAACAGTT-GAAGATGGTCGAACTCTTGCAGATTACAATATCCAGAAAG
* * * *
1786 AGTCCACACTGCATCTTGTCCTTCGCCTCCGTGGTGG
193 AGTCTACCCTCCA-CTTGTCCTTCGACTCCGTGGTGG
1823 TTTCTAA
Statistics
Matches: 741, Mismatches: 160, Indels: 25
0.80 0.17 0.03
Matches are distributed among these distances:
682 22 0.03
683 366 0.49
684 345 0.47
685 8 0.01
ACGTcount: A:0.30, C:0.21, G:0.26, T:0.23
Consensus pattern (681 bp):
GGCATGCAAATATTCGTGAAGACTCTCACCGGAAAGACAATCACCCTGGAAGTGGAGAGCTCAGA
CACCATCGACAATGTAAAAGCGAAAATCCAGGACAAGGAAGGGATTCCACCAGACCAGCAGAGGT
TGATATTTGCTGGTAAACAGTTGAAGATGGTCGAACTCTTGCAGATTACAATATCCAGAAAGAGT
CTACCCTCCACTTGTCCTTCGACTCCGTGGTGGAATGCAGATCTTTGTAAAAACCCTTACTGGAA
AAACCATCACCATTGAGGTGGAGAGCTCAGACACAATCGATAATGTCAAGGCCAAGATCCAAGAC
AAGGAAGGGATCCCACCAGACCAGCAGAGGTTGATTTTTGCCGGAAAACAACTCGAAGATGGGAG
GACACTTGCAGATTACAACATCCAGAAAGAATCGACCCTCCACCTTGTCCTTCGACTTAGAGGAG
GGATGCAGATATTCGTAAAACCCTCACCGGAAAAACCATCACCCTGGAGGTCGAGAGCTCGGACA
CCATTGACAATGTGAAAGCCAAAATTCAGGACAAGGAAGGGATCCCACCAGACCAGCAGAGGTTG
ATTTTTGCTGGAAAGCAGCTCGAAGATGGCAGAACCCTTGCGGACTATAACATCCAAAAGGAATC
GACCCTCCATTTGGTGTTACGACTCCGAGGA
Done.