Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Cotton_A_37254

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 858

Length: 1431
ACGTcount: A:0.28, C:0.21, G:0.26, T:0.26


Found at i:1386 original size:6 final size:6

Alignment explanation


    Indices: 1375--1403  Score: 58
    Period size: 6  Copynumber: 4.8  Consensus size: 6

       1365 ATCTGATGCA

                                             
       1375 CCTGCC CCTGCC CCTGCC CCTGCC CCTGC
          1 CCTGCC CCTGCC CCTGCC CCTGCC CCTGC

       1404 TGCATATTTA


Statistics
Matches: 23,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   6   23  1.00

ACGTcount: A:0.00, C:0.66, G:0.17, T:0.17


Consensus pattern (6 bp):   
CCTGCC

Done.