Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Cotton_A_09642

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4343
ACGTcount: A:0.28, C:0.24, G:0.21, T:0.27


Found at i:3193 original size:27 final size:27

Alignment explanation


    Indices: 3118--3181  Score: 119
    Period size: 27  Copynumber: 2.4  Consensus size: 27

       3108 CCTGGAGGTC

                   *                   
       3118 GAGCTCCAGGACCTCCACCTCCACCTG
          1 GAGCTCCTGGACCTCCACCTCCACCTG

                                       
       3145 GAGCTCCTGGACCTCCACCTCCACCTG
          1 GAGCTCCTGGACCTCCACCTCCACCTG

                      
       3172 GAGCTCCTGG
          1 GAGCTCCTGG

       3182 TGTTGGACCT


Statistics
Matches: 36,  Mismatches: 1, Indels: 0
        0.97            0.03        0.00

Matches are distributed among these distances:
  27   36  1.00

ACGTcount: A:0.16, C:0.45, G:0.22, T:0.17


Consensus pattern (27 bp):   
GAGCTCCTGGACCTCCACCTCCACCTG
Done.