Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Cotton_A_23864

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1887
ACGTcount: A:0.29, C:0.19, G:0.22, T:0.30


Found at i:1327 original size:17 final size:18

Alignment explanation


    Indices: 1295--1329  Score: 54
    Period size: 17  Copynumber: 2.0  Consensus size: 18

       1285 TATGCACAAC

                              
       1295 ATGTTCCATCCAGTTTCA
          1 ATGTTCCATCCAGTTTCA

                     *        
       1313 ATGTTCCA-GCAGTTTCA
          1 ATGTTCCATCCAGTTTCA

       1330 GGTGCTGCTG


Statistics
Matches: 16,  Mismatches: 1, Indels: 1
        0.89            0.06        0.06

Matches are distributed among these distances:
  17    8  0.50
  18    8  0.50

ACGTcount: A:0.23, C:0.26, G:0.14, T:0.37


Consensus pattern (18 bp):   
ATGTTCCATCCAGTTTCA
Done.