Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Cotton_A_31091

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 910

Length: 1518
ACGTcount: A:0.31, C:0.19, G:0.26, T:0.24


Found at i:1499 original size:14 final size:14

Alignment explanation


    Indices: 1472--1504  Score: 50
    Period size: 14  Copynumber: 2.4  Consensus size: 14

       1462 CAGAGCAGAC

                          
       1472 CTTCCCAAACATGG
          1 CTTCCCAAACATGG

                           
       1486 CTTCACCAAA-ATGG
          1 CTTC-CCAAACATGG

                 
       1500 CTTCC
          1 CTTCC

       1505 ATTCACTCAT


Statistics
Matches: 18,  Mismatches: 0, Indels: 3
        0.86            0.00        0.14

Matches are distributed among these distances:
  13    1  0.06
  14   12  0.67
  15    5  0.28

ACGTcount: A:0.27, C:0.36, G:0.12, T:0.24


Consensus pattern (14 bp):   
CTTCCCAAACATGG
Done.