Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Cotton_A_30680

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 261

Length: 435
ACGTcount: A:0.34, C:0.18, G:0.24, T:0.25


Found at i:233 original size:15 final size:15

Alignment explanation


    Indices: 209--242  Score: 50
    Period size: 15  Copynumber: 2.3  Consensus size: 15

        199 TTTAATGTTT

                 *     *   
        209 CAAACGAAATAGAAG
          1 CAAACCAAATACAAG

                           
        224 CAAACCAAATACAAG
          1 CAAACCAAATACAAG

                
        239 CAAA
          1 CAAA

        243 GTTCTTCAAT


Statistics
Matches: 17,  Mismatches: 2, Indels: 0
        0.89            0.11        0.00

Matches are distributed among these distances:
  15   17  1.00

ACGTcount: A:0.62, C:0.21, G:0.12, T:0.06


Consensus pattern (15 bp):   
CAAACCAAATACAAG
Done.