Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Cotton_A_39436

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 275

Length: 459
ACGTcount: A:0.27, C:0.25, G:0.21, T:0.27


Found at i:170 original size:22 final size:24

Alignment explanation


    Indices: 141--197  Score: 66
    Period size: 24  Copynumber: 2.5  Consensus size: 24

        131 CAAACAAGTC

                                    
        141 TTCCCTTCTTCA-CTGCTC-CT-T
          1 TTCCCTTCTTCATCTGCTCTCTCT

                     *      *        
        162 TCTCCCTTCATCATCTTCTCTCTCT
          1 T-TCCCTTCTTCATCTGCTCTCTCT

                       
        187 TTCCCTTCTTC
          1 TTCCCTTCTTC

        198 CTTTTCAGGG


Statistics
Matches: 29,  Mismatches: 3, Indels: 5
        0.78            0.08        0.14

Matches are distributed among these distances:
  21    1  0.03
  22   10  0.34
  23    5  0.17
  24   11  0.38
  25    2  0.07

ACGTcount: A:0.05, C:0.44, G:0.02, T:0.49


Consensus pattern (24 bp):   
TTCCCTTCTTCATCTGCTCTCTCT
Done.