Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Cotton_A_29440

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 788

Length: 1314
ACGTcount: A:0.31, C:0.23, G:0.19, T:0.28


Found at i:795 original size:36 final size:36

Alignment explanation


    Indices: 755--833  Score: 158
    Period size: 36  Copynumber: 2.2  Consensus size: 36

        745 TATGTTTTGT

                                                
        755 ATGAAGCTAATCGCAACAACAACTTTGTTTACGAGA
          1 ATGAAGCTAATCGCAACAACAACTTTGTTTACGAGA

                                                
        791 ATGAAGCTAATCGCAACAACAACTTTGTTTACGAGA
          1 ATGAAGCTAATCGCAACAACAACTTTGTTTACGAGA

                   
        827 ATGAAGC
          1 ATGAAGC

        834 GCAGTTTCAT


Statistics
Matches: 43,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  36   43  1.00

ACGTcount: A:0.39, C:0.19, G:0.18, T:0.24


Consensus pattern (36 bp):   
ATGAAGCTAATCGCAACAACAACTTTGTTTACGAGA
Done.