Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Cotton_A_07517

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2235
ACGTcount: A:0.28, C:0.21, G:0.23, T:0.28


Found at i:1452 original size:24 final size:24

Alignment explanation


    Indices: 1425--1479  Score: 101
    Period size: 24  Copynumber: 2.3  Consensus size: 24

       1415 AGTGCTTAGG

                                    
       1425 TGGCTCTAAAGATGCAAAGGACAA
          1 TGGCTCTAAAGATGCAAAGGACAA

                                    
       1449 TGGCTCTAAAGATGCAAAGGACAA
          1 TGGCTCTAAAGATGCAAAGGACAA

              *    
       1473 TGACTCT
          1 TGGCTCT

       1480 TACAGTTTCT


Statistics
Matches: 30,  Mismatches: 1, Indels: 0
        0.97            0.03        0.00

Matches are distributed among these distances:
  24   30  1.00

ACGTcount: A:0.38, C:0.18, G:0.24, T:0.20


Consensus pattern (24 bp):   
TGGCTCTAAAGATGCAAAGGACAA
Done.