Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Cotton_A_01972

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 444

Length: 741
ACGTcount: A:0.32, C:0.19, G:0.22, T:0.27


Found at i:647 original size:6 final size:6

Alignment explanation


    Indices: 636--662  Score: 54
    Period size: 6  Copynumber: 4.5  Consensus size: 6

        626 GGTGGCCTAG

                                           
        636 TGACGA TGACGA TGACGA TGACGA TGA
          1 TGACGA TGACGA TGACGA TGACGA TGA

        663 TGTGAGTTGT


Statistics
Matches: 21,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   6   21  1.00

ACGTcount: A:0.33, C:0.15, G:0.33, T:0.19


Consensus pattern (6 bp):   
TGACGA

Done.