Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Cotton_A_06198

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 671

Length: 1119
ACGTcount: A:0.35, C:0.17, G:0.26, T:0.23


Found at i:430 original size:21 final size:21

Alignment explanation


    Indices: 406--449  Score: 56
    Period size: 21  Copynumber: 2.1  Consensus size: 21

        396 GCAAAGTCTA

                                   
        406 AGAAGAA-TG-GAAGCCAAGAGG
          1 AGAAGAAGTGAGAAG-CAA-AGG

                                 
        427 AGAAGAAGTGAGAAGCAAAGG
          1 AGAAGAAGTGAGAAGCAAAGG

              
        448 AG
          1 AG

        450 TTCGAGAGAG


Statistics
Matches: 21,  Mismatches: 0, Indels: 4
        0.84            0.00        0.16

Matches are distributed among these distances:
  21   12  0.57
  22    5  0.24
  23    4  0.19

ACGTcount: A:0.50, C:0.07, G:0.39, T:0.05


Consensus pattern (21 bp):   
AGAAGAAGTGAGAAGCAAAGG
Done.