Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Cotton_A_06033

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2388
ACGTcount: A:0.33, C:0.18, G:0.25, T:0.24


Found at i:1827 original size:66 final size:66

Alignment explanation


    Indices: 1740--1946  Score: 371
    Period size: 66  Copynumber: 3.1  Consensus size: 66

       1730 CCTCATCTTC

                                                                             
       1740 ATGGCGTTCACCTTCTCAAGTCATGACAGGGTTCGATGGTACTCAGACCATGGACTACATGAGCG
          1 ATGG-GTTCACCTTCTCAAGTCATGACAGGGTTCGATGGTACTCAGACCATGGACTACATGAGCG

              
       1805 GA
         65 GA

                                             *                               
       1807 ATGGGTTCACCTTCTCAAGTCATGACAGGGTTCAATGGTACTCAGACCATGGACTACATGAGCGG
          1 ATGGGTTCACCTTCTCAAGTCATGACAGGGTTCGATGGTACTCAGACCATGGACTACATGAGCGG

             
       1872 A
         66 A

                                                        *                    
       1873 ATGGGTTCACCTTCTCAAGTCATGACAGGGTT-GAATGGTACTCCGACCATGGACTACATGAGCG
          1 ATGGGTTCACCTTCTCAAGTCATGACAGGGTTCG-ATGGTACTCAGACCATGGACTACATGAGCG

              
       1937 GA
         65 GA

                    
       1939 ATGGGTTC
          1 ATGGGTTC

       1947 TCATTATGCT


Statistics
Matches: 136,  Mismatches: 3, Indels: 3
        0.96            0.02        0.02

Matches are distributed among these distances:
  66  132  0.97
  67    4  0.03

ACGTcount: A:0.26, C:0.23, G:0.27, T:0.25


Consensus pattern (66 bp):   
ATGGGTTCACCTTCTCAAGTCATGACAGGGTTCGATGGTACTCAGACCATGGACTACATGAGCGG
A
Done.