Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Cotton_A_03603

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 952

Length: 1587
ACGTcount: A:0.29, C:0.20, G:0.23, T:0.28


Found at i:348 original size:15 final size:17

Alignment explanation


    Indices: 314--351  Score: 53
    Period size: 15  Copynumber: 2.4  Consensus size: 17

        304 TTTGTTCGTC

                             
        314 CAGAAGATGTGGTTGCT
          1 CAGAAGATGTGGTTGCT

                           * 
        331 CAGAAGAT-T-GTTGTT
          1 CAGAAGATGTGGTTGCT

                  
        346 CAGAAG
          1 CAGAAG

        352 GATAGCTCCC


Statistics
Matches: 20,  Mismatches: 1, Indels: 2
        0.87            0.04        0.09

Matches are distributed among these distances:
  15   11  0.55
  16    1  0.05
  17    8  0.40

ACGTcount: A:0.29, C:0.11, G:0.32, T:0.29


Consensus pattern (17 bp):   
CAGAAGATGTGGTTGCT
Done.