Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Cotton_A_10758

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1857
ACGTcount: A:0.28, C:0.21, G:0.23, T:0.27


Found at i:1710 original size:3 final size:3

Alignment explanation


    Indices: 1702--1757  Score: 85
    Period size: 3  Copynumber: 18.7  Consensus size: 3

       1692 GCCAAGAAAA

                                                                  *     *  
       1702 GCT GCT GCT GCT GCT GCT GCT GCT GCT GCT GCT GCT GCT GCA GCT CCT
          1 GCT GCT GCT GCT GCT GCT GCT GCT GCT GCT GCT GCT GCT GCT GCT GCT

            *         
       1750 CCT GCT GC
          1 GCT GCT GC

       1758 AGGTGTTCAA


Statistics
Matches: 49,  Mismatches: 4, Indels: 0
        0.92            0.08        0.00

Matches are distributed among these distances:
   3   49  1.00

ACGTcount: A:0.02, C:0.38, G:0.30, T:0.30


Consensus pattern (3 bp):   
GCT

Done.