Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Cotton_A_31599

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2090
ACGTcount: A:0.32, C:0.17, G:0.30, T:0.22


Found at i:216 original size:3 final size:3

Alignment explanation


    Indices: 208--236  Score: 58
    Period size: 3  Copynumber: 9.7  Consensus size: 3

        198 GGTGGAGCTC

                                                  
        208 GAG GAG GAG GAG GAG GAG GAG GAG GAG GA
          1 GAG GAG GAG GAG GAG GAG GAG GAG GAG GA

        237 CGGTGGTCGG


Statistics
Matches: 26,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   3   26  1.00

ACGTcount: A:0.34, C:0.00, G:0.66, T:0.00


Consensus pattern (3 bp):   
GAG

Done.