Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Cotton_A_28152

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 200

Length: 300
ACGTcount: A:0.28, C:0.18, G:0.24, T:0.30


Found at i:153 original size:3 final size:3

Alignment explanation


    Indices: 145--186  Score: 59
    Period size: 3  Copynumber: 14.0  Consensus size: 3

        135 CAATATCAGA

                                                       *            
        145 TCT TCT TCTT TCT T-T TCT TCT TCT TCT TCT TCA TCT TCT TCT
          1 TCT TCT TC-T TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT

        187 GCTGCTGCTG


Statistics
Matches: 35,  Mismatches: 2, Indels: 4
        0.85            0.05        0.10

Matches are distributed among these distances:
   2    2  0.06
   3   30  0.86
   4    3  0.09

ACGTcount: A:0.02, C:0.31, G:0.00, T:0.67


Consensus pattern (3 bp):   
TCT

Done.