Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Cotton_A_07915

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 561

Length: 936
ACGTcount: A:0.31, C:0.19, G:0.20, T:0.30


Found at i:585 original size:18 final size:19

Alignment explanation


    Indices: 553--591  Score: 53
    Period size: 18  Copynumber: 2.1  Consensus size: 19

        543 TAGCAATTCC

                      *        
        553 ATGCATGAAATTTCAACAA
          1 ATGCATGAAAGTTCAACAA

                           *   
        572 ATGC-TGAAAGTTCAGCAA
          1 ATGCATGAAAGTTCAACAA

              
        590 AT
          1 AT

        592 CAAAGTCCAG


Statistics
Matches: 18,  Mismatches: 2, Indels: 1
        0.86            0.10        0.05

Matches are distributed among these distances:
  18   14  0.78
  19    4  0.22

ACGTcount: A:0.44, C:0.15, G:0.15, T:0.26


Consensus pattern (19 bp):   
ATGCATGAAAGTTCAACAA
Done.