Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Cotton_A_05970

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 417

Length: 696
ACGTcount: A:0.27, C:0.20, G:0.30, T:0.24


Found at i:47 original size:3 final size:3

Alignment explanation


    Indices: 39--70  Score: 64
    Period size: 3  Copynumber: 10.7  Consensus size: 3

         29 TAGGGTTGCC

                                                      
         39 TGG TGG TGG TGG TGG TGG TGG TGG TGG TGG TG
          1 TGG TGG TGG TGG TGG TGG TGG TGG TGG TGG TG

         71 ACGGTGAAGT


Statistics
Matches: 29,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   3   29  1.00

ACGTcount: A:0.00, C:0.00, G:0.66, T:0.34


Consensus pattern (3 bp):   
TGG

Done.