Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Cotton_A_34449

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3582
ACGTcount: A:0.28, C:0.18, G:0.23, T:0.31


Found at i:1798 original size:13 final size:13

Alignment explanation


    Indices: 1780--1817  Score: 51
    Period size: 13  Copynumber: 3.0  Consensus size: 13

       1770 AAGCACAGCA

                         
       1780 AATCTGTTGATGC
          1 AATCTGTTGATGC

                   *     
       1793 AATCTGTAGATG-
          1 AATCTGTTGATGC

              *          
       1805 AAGCTGTTGATGC
          1 AATCTGTTGATGC

       1818 GGCATCTCAT


Statistics
Matches: 21,  Mismatches: 3, Indels: 2
        0.81            0.12        0.08

Matches are distributed among these distances:
  12   10  0.48
  13   11  0.52

ACGTcount: A:0.26, C:0.13, G:0.26, T:0.34


Consensus pattern (13 bp):   
AATCTGTTGATGC
Done.