Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Cotton_A_12592

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 442

Length: 738
ACGTcount: A:0.39, C:0.15, G:0.23, T:0.23


Found at i:574 original size:39 final size:39

Alignment explanation


    Indices: 520--606  Score: 165
    Period size: 39  Copynumber: 2.2  Consensus size: 39

        510 AATGGAGGCT

                                                   
        520 AAGGAAGAAAAGAAGGAGATTGTAAAAGTTGAACCCAAA
          1 AAGGAAGAAAAGAAGGAGATTGTAAAAGTTGAACCCAAA

                                             *     
        559 AAGGAAGAAAAGAAGGAGATTGTAAAAGTTGAAGCCAAA
          1 AAGGAAGAAAAGAAGGAGATTGTAAAAGTTGAACCCAAA

                     
        598 AAGGAAGAA
          1 AAGGAAGAA

        607 GTGAAAGTAG


Statistics
Matches: 47,  Mismatches: 1, Indels: 0
        0.98            0.02        0.00

Matches are distributed among these distances:
  39   47  1.00

ACGTcount: A:0.55, C:0.06, G:0.28, T:0.11


Consensus pattern (39 bp):   
AAGGAAGAAAAGAAGGAGATTGTAAAAGTTGAACCCAAA
Done.