Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Cotton_A_32427

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2898
ACGTcount: A:0.30, C:0.19, G:0.24, T:0.27


Found at i:2741 original size:3 final size:3

Alignment explanation


    Indices: 2735--2769  Score: 70
    Period size: 3  Copynumber: 11.7  Consensus size: 3

       2725 TTGATGATAA

                                                          
       2735 CAC CAC CAC CAC CAC CAC CAC CAC CAC CAC CAC CA
          1 CAC CAC CAC CAC CAC CAC CAC CAC CAC CAC CAC CA

       2770 TCATCTACTT


Statistics
Matches: 32,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   3   32  1.00

ACGTcount: A:0.34, C:0.66, G:0.00, T:0.00


Consensus pattern (3 bp):   
CAC

Done.