Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Cotton_A_21204

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 675

Length: 1125
ACGTcount: A:0.29, C:0.23, G:0.29, T:0.19


Found at i:1006 original size:21 final size:21

Alignment explanation


    Indices: 981--1021  Score: 55
    Period size: 21  Copynumber: 2.0  Consensus size: 21

        971 AAATGGCGAG

                          *      
        981 GGAGATAGAGACGATGAGGAT
          1 GGAGATAGAGACGAAGAGGAT

                  *    *        
       1002 GGAGATGGAGATGAAGAGGA
          1 GGAGATAGAGACGAAGAGGA

       1022 CCGAGGTGAT


Statistics
Matches: 17,  Mismatches: 3, Indels: 0
        0.85            0.15        0.00

Matches are distributed among these distances:
  21   17  1.00

ACGTcount: A:0.39, C:0.02, G:0.46, T:0.12


Consensus pattern (21 bp):   
GGAGATAGAGACGAAGAGGAT
Done.