Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Cotton_A_29881

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 468

Length: 780
ACGTcount: A:0.21, C:0.26, G:0.26, T:0.27


Found at i:733 original size:18 final size:18

Alignment explanation


    Indices: 710--744  Score: 61
    Period size: 18  Copynumber: 1.9  Consensus size: 18

        700 TACGCCCGCT

                              
        710 ACTCCCAAGGCGGAGACC
          1 ACTCCCAAGGCGGAGACC

                   *         
        728 ACTCCCACGGCGGAGAC
          1 ACTCCCAAGGCGGAGAC

        745 GGTAAGCGGT


Statistics
Matches: 16,  Mismatches: 1, Indels: 0
        0.94            0.06        0.00

Matches are distributed among these distances:
  18   16  1.00

ACGTcount: A:0.26, C:0.40, G:0.29, T:0.06


Consensus pattern (18 bp):   
ACTCCCAAGGCGGAGACC
Done.