Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Cotton_A_22306

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 478

Length: 798
ACGTcount: A:0.32, C:0.21, G:0.23, T:0.23


Found at i:224 original size:24 final size:24

Alignment explanation


    Indices: 186--266  Score: 85
    Period size: 24  Copynumber: 3.4  Consensus size: 24

        176 CAACTAAGAA

                      *             
        186 AGAGGAGCAGGTTCCAACCAAGGT
          1 AGAGGAGCAGTTTCCAACCAAGGT

                    *        *     *  
        210 AGCA-GAGGA-TCTTCCTACCAAAGT
          1 AG-AGGAGCAGT-TTCCAACCAAGGT

                                    
        234 AGAGGAGCAGTTTCCAACCAAGGT
          1 AGAGGAGCAGTTTCCAACCAAGGT

               *     
        258 AGATGAGCA
          1 AGAGGAGCA

        267 TCCTCAGCAT


Statistics
Matches: 45,  Mismatches: 8, Indels: 8
        0.74            0.13        0.13

Matches are distributed among these distances:
  23    1  0.02
  24   42  0.93
  25    2  0.04

ACGTcount: A:0.35, C:0.21, G:0.28, T:0.16


Consensus pattern (24 bp):   
AGAGGAGCAGTTTCCAACCAAGGT
Done.